HERRY423 avatar

bionexus

v0.10.0

by HERRY423 · author: BioNexus Team

bionexus is an Agent Plugin published by HERRY423 that packages 8 skills and 11 MCP servers for ChatGPT, Codex, Cursor, GitHub Copilot, VS Code, and Kiro. Verified against the official Agent Plugins 1.0.0 schema on 2026-08-20; Apache-2.0 licensed; 25 stars on the host repository.

Scientific Reliability Layer & Scientific Warrant Engine for AI Agents (Warrant-First Evidence Assessment, Fail-Closed Invariants, Evidence-Capped Claims, Zero Silent Substitution).

Skills
8
MCP servers
11
Stars
25
License
Apache-2.0

Links

Skills · 8

  • instrument-data-to-allotrope
  • nextflow-development
  • provenance-and-audit
  • scientific-problem-selection
  • scvi-tools
  • single-cell-rna-qc
  • spatial-transcriptomics
  • start

MCP servers · 11

  • bionexus-local-mcp
  • biorender
  • biorxiv
  • c-trials
  • chembl
  • consensus
  • ot
  • owkin
  • pubmed
  • synapse
  • wiley

Category

Research & Search — assigned by this directory, not declared in the manifest.

Keywords

bionexus · bioinformatics · single-cell · scanpy · scvi-tools · nextflow · nf-core · allotrope · mcp · variant-interpretation · spatial-transcriptomics · squidpy

Related plugins

  • Scientific Reliability Layer & Scientific Warrant Engine for AI Agents (Warrant-First Evidence Assessment, Fail-Closed Invariants, Evidence-Capped Claims, Zero Silent Substitution).

  • context7upstash

    Up-to-date documentation lookup. Pull version-specific documentation and code examples directly from source repositories into your LLM context.

  • Ready-to-use scientific and research Agent Skills for biology, chemistry, medicine, and related workflows.

  • openvikingvolcengine

    Semantic long-term memory and context engine for coding agents. Recall prior knowledge with the find/search/read MCP tools and persist durable facts with remember/write, backed by an OpenViking server.

  • hindsightvectorize-io

    Long-term memory for AI agents. Recalls relevant past context before you answer and retains durable facts as you work, backed by Hindsight's retain/recall/reflect memory engine.

  • n8n-mcp-skillsczlonkowski

    Expert skills for building n8n workflows with the n8n-mcp MCP server

Show the badge

bionexus passed verification against the official 1.0.0 schema. Add the badge to your README to show it — it links readers to this verified listing.

Agent Plugin: verified badge preview
[![Verified Agent Plugin](https://agentpluginsdirectory.com/badge.svg)](https://agentpluginsdirectory.com/plugins/bionexus--herry423)

Verified : manifest fetched from GitHub and checked against the official Agent Plugins 1.0.0 schema (agent-plugins.org).