taiwan-scientific-agent-skills

What taiwan-scientific-agent-skills does, in the publisher's words

From the project README, punctuation lightly normalized · Open the README on GitHub →

Links

• github.com/rangching/taiwan-scientific-agent-skills
• plugin.json (manifest)

Skills · 166

adaptyv

How to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieval. Use this skill whenever the user mentions Adaptyv, Foundry API, protein binding assays, protein screening experiments, BLI/SPR assays, thermostability assays, or wants to submit p…

aeon

This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algori…

alphagenome

Look up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus raw and quantile scores for RNA-seq, DNase, ATAC, ChIP-TF, ChIP-histone, CAGE, PRO-cap, splicing, polyadenylation and contact-map tracks), score varian…

analytical-method-validation

Plan, execute, and document validation, verification, and transfer of analytical procedures under the governing framework, ICH Q2(R2) and Q14, USP <1220>/<1225>/<1226>, ICH M10 bioanalytical, CLSI EP, or ISO/IEC 17025. Use for HPLC, LC-MS/MS, GC, CE, ICP-MS, dissolution, qNMR, qPCR, NIR, and ligand…

anndata

Data structure for annotated matrices in single-cell analysis. Use when working with.h5ad files or integrating with the scverse ecosystem. This is the data format skill: for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.

arbor

Autonomously improve a real artifact (code, training recipe, agent harness, data pipeline, prompt) against an objective and an evaluator, using Hypothesis Tree Refinement (HTR) from the Arbor paper. Use this whenever someone wants to iteratively optimize something over many experiments without over…

arboreto

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed com…

astropy

Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time systems, WCS, and cosmology. Use when implementing or debugging astronomical data analysis code with Astropy.

autoskill

Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use when the user asks to analyze their recent work and propose…

benchling-integration

Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries. Use when automating lab data with benchling-sdk or the v2 API.

bgpt-paper-search

Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for literature reviews, evidence synthesis, and finding experiment…

bids

Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS layouts, validating compliance, converting DICOM to BIDS, writing…

biopython

bioservices

bulk-rnaseq

cellxgene-census

cirq

citation-management

clinical-decision-support

clinical-reports

cobrapy

consciousness-council

dask

database-lookup

datalad

datamol

deepchem

deepspot-m

deeptools

depmap

dhdna-profiler

diffdock

dnanexus-integration

docx

esm

etetoolkit

exa-search

experimental-design

exploratory-data-analysis

flowio

fluidsim

folklore-variant-evidence

generate-image

geniml

genomic-coordinates

genomic-intelligence

geomaster

geopandas

get-available-resources

gget

ginkgo-cloud-lab

glycoengineering

gtars

histolab

hugging-science

hypogenic

hypothesis-generation

imaging-data-commons

infographics

iso-standards-readiness

lab-hardware-cad

labarchive-integration

lamindb

latchbio-integration

latex-posters

liteparse

literature-review

markdown-mermaid-writing

market-research-reports

markitdown

matchms

matlab

matplotlib

medchem

modal

molecular-dynamics

molfeat

ncats-arax

networkx

neurokit2

neuropixels-analysis

nextflow

omero-integration

onekgpd

ontology-term-resolution

open-notebook

openpiv

opentrons-integration

optimize-for-gpu

pacsomatic

paper-lookup

paperclip

paperzilla

parallel-web

pathml

pathogen-variant-surveillance

pathway-enrichment

pdf

peer-review

pennylane

phylogenetics

pi-agent

pkpd-modeling

polars-bio

polars

pptx-posters

pptx

primekg

protocolsio-integration

pufferlib

pydeseq2

pydicom

pyhealth

pylabrobot

pymatgen

pymc

pymoo

pyopenms

pysam

pytdc

pytorch-lightning

pyzotero

qiskit

qutip

rdkit

relsa-severity-assessment

research-grants

research-lookup

rowan

scanpy

scholar-evaluation

scientific-brainstorming

scientific-critical-thinking

scientific-schematics

scientific-slides

scientific-visualization

scientific-writing

scikit-bio

scikit-learn

scikit-survival

scvelo

scvi-tools

seaborn

shap

simpy

stable-baselines3

statistical-analysis

statistical-power

statsmodels

sympy

tamarind

tiledbvcf

timesfm-forecasting

torch-geometric

torchdrug

transformers

treatment-plans

umap-learn

uncertainty-and-units

usfiscaldata

vaex

venue-templates

waypoint-bio

what-if-oracle

xlsx

zarr-python

Descriptions come from the frontmatter of each SKILL.md, punctuation lightly normalized.

Category

Other. Assigned by this directory. Agent Plugins 1.0.0 has no category field, so no manifest declares one.

Keywords

agent-skills · science · research · bioinformatics · cheminformatics · biology · chemistry · medicine · taiwan · zh-Hant-TW

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